Crate noodles_vcf

noodles-vcf handles the reading and writing of the VCF format.

Examples

Read all records from a file

use noodles_vcf as vcf;

let mut reader = vcf::reader::Builder::default().build_from_path("sample.vcf")?;
let header = reader.read_header()?;

for result in reader.records(&header) {
    let record = result?;
    println!("{:?}", record);
}

Re-exports

• pub use self::header::Header;
• pub use self::indexed_reader::IndexedReader;
• pub use self::reader::Reader;
• pub use self::record::Record;

Modules

• header
  VCF header and fields.
• indexed_reader
  Indexed VCF reader.
• reader
  VCF reader and iterators.
• record
  VCF record and fields.

Structs

• AsyncReader
  An async VCF reader.
• AsyncWriter
  An async VCF writer.
• Writer
  A VCF writer.

Traits

• VariantReader
  A variant format reader.
• VariantWriter
  A variant format writer.